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My healthy blueberry muffins are moist and fluffy and packed with blueberries. They are perfect to make ahead or enjoy straight from the oven for a wholesome snack.

If you love healthy muffins as we do, try my almond flour muffins, healthy zucchini muffins, protein muffins, and healthy oatmeal muffins next.
Table of Contents
It’s no secret that I love a good blueberry muffin (hello, almond flour blueberry muffins). When I’m being a little more wholesome or want something that could pass for breakfast, my healthy blueberry muffins are a winner.
Why I love this recipe
- Wholesome ingredients. These are made with whole wheat flour and Greek yogurt and are naturally sweetened, so you can feel good about enjoying them.
- BEST TEXTURE. The muffins have a light crumb while being moist and fluffy in the middle. They are also packed with so many blueberries, so every bite has some.
- Easy to make. Like sugar free blueberry muffins, my recipe uses just a few simple ingredients and 20 minutes of baking time.
- Easy to customize. I like to keep them as they are, but you can frost them, fold them through fun mix-ins (like white chocolate!), or even make them into mini muffins.
★★★★★ REVIEW
“I could eat these healthy blueberry muffins all day! Super moist and fluffy.” – Fernanda
Key Ingredients
- Whole wheat flour and white whole wheat flour. I like to use a mix of these two flours, which gives the muffins extra fiber and whole grains while keeping them softer in texture. You can use all-white whole wheat flour if you prefer.
- Baking powder. Helps the muffins to rise and makes them fluffy.
- Cinnamon. Adds flavor and warmth to the muffins.
- Salt. Just a pinch to balance the sweetness.
- Olive oil. I like using olive oil over butter to make these muffins a little healthier but feel free to use butter if you prefer. Coconut oil is also a fabulous alternative.
- Greek yogurt. Or plain yogurt. I like using this to cut down on the fat without affecting how moist the muffins will be. I usually use plain Greek yogurt but if you prefer sweeter muffins, I’ve made these with blueberry flavored yogurt.
- Maple syrup. I like to use maple syrup for sweetness instead of sugar. I also tested these muffins with honey and agave nectar, which worked fine.
- Eggs. Room temperature, please.
- Vanilla extract. A must for any good muffin.
- Blueberries. Both fresh and frozen blueberries can be used.
How to make healthy blueberry muffins
I’ve included step-by-step photos below to make this recipe easy to follow at home. For the full printable recipe instructions and ingredient quantities, scroll to the recipe card at the bottom of this post.

Step 1- Make the batter. Add all the dry ingredients to a large mixing bowl and mix well. In a separate bowl, whisk together all the wet ingredients, then combine.

Step 2– Prep the blueberries. Toss the blueberries in a little flour and fold them into the muffin batter.

Step 3- Assemble. Transfer the muffin batter to the 12-count muffin tin.

Step 4- Bake for 20-22 minutes or until the toothpick inserted into the center of a muffin comes out clean.
Arman’s recipe tips
- Do not overbake the muffins, as they will continue to bake as they cool down. Once a toothpick comes out ‘just clean,’ they are ready to be removed from the oven.
- Avoid overmixing too much. You want the ingredients to be ‘just incorporated’ with no visible pockets of flour. I find that overmixing can result in slightly gummier muffins.
Frequently asked questions
Yes! I tested these muffins using flax eggs and chia eggs, and they both worked really well. My only recommendation is to bake the muffins a little longer to compensate.
You can, but only if the gluten-free flour mix has xanthan gum added in. Do not use alternative flours like coconut flour or almond flour, as it won’t work.

More healthy recipes with blueberries

Healthy Blueberry Muffins
Video
Ingredients
- 1 cup whole wheat flour
- 3/4 cup white whole wheat flour
- 2 teaspoons baking powder
- 1/2 teaspoon cinnamon
- 1/4 teaspoon salt
- 1/3 cup olive oil
- 1/2 cup maple syrup
- 2 large eggs
- 1 cup plain yogurt or Greek yogurt
- 1 teaspoon vanilla extract
- 1 cup blueberries
Instructions
- Preheat the oven to 180C/350F. Grease a 12-count muffin tin and set aside.
- In a large bowl, add the whole wheat flour, white flour, baking powder, cinnamon, and salt, and mix well.
- In a separate bowl, whisk together the oil, maple syrup, and eggs until combined. Stir through the yogurt and vanilla extract. Add the wet ingredients to the dry ingredients and mix until just combined.
- Toss the blueberries with a tablespoon or so of flour. Fold them through the muffin batter.
- Distribute the muffin batter amongst the 12-count muffin tin and bake for 20-22 minutes, or until a toothpick comes out clean from the center.
- Let the muffins cool in the pan for 5 minutes before carefully transferring them to a wire rack to cool completely.
Notes
- Make them dairy-free. Swap out the yogurt for a dairy-free yogurt or coconut-based yogurt.
- Use different fruits. Add other berries to the batter, like raspberries and strawberries. Stone fruits like peaches, apples, and pears are also great.
- Use mix-ins. Blueberries pair well with white chocolate chips, nuts, and seeds.
The muffins look wonderful! Are your pictures the vegan or paleo version?
Hi Sara- It’s the flourless vegan version. The paleo ones are a little more dense but fluffier (thanks to the eggs)
Niki always cracks me up. You should listen to MY sisters. Anyways, lately my full days of eating have been extreeeeeeeeemely unexciting, but let’s just say that sweet potatoes, greens, egg whites, peanut butter and dark chocolate are still on my radar! And I can never forget a little of your desserts at night 😉
🙂 You are the best.
I’m actually really sad that it’s almost Saturday and I have no curry date planned 🙁
The more you write about your sister, the more I love her! I don’t get out of bed before 11 – at the very, very earliest.
You’d get along so well haha!
These have answered all of my breakfast prayers!!!! Yummy carby sweet things for the ultimate breakfast win! I die.
😀 Anything for you, Miss United Broccoli.
Wow Arman, I think you really hit on a winner here, because it caters to so many of the food restrictions!!! They look AMAZING.
Thanks so much, Emily!
Sweet and sour sauce is great. When I was little, my mom had a drawer full of the extra sauces from fast food restaurants that was a “treat” to use every once in a while #blessed
The weirdest thing I had for breakfast recently is black bean soup. It was calling to me hahaha
Oh nice- We used to do that too!
Oh my gosh that crumbly mess of a muffin needs to be in my mouth NOW. These look so dang good! And for some reason strawberries are on sale like crazy around me [4 packs for $5!] but blueberries remain at $3.99 a pack. What the heck?!
What!! That is insane- Blueberries were $1 in North Hollywood!
Yum! I love a good blueberry muffin – especially a healthier one!
My breakfasts are always pretty conventional (eggs, smoothies, oats, etc.) – I guess the Chick-fil-a chicken biscuit I had on the road last Saturday counts since I never eat fast food! It was worth it, though.
Oh wow- Chick-fil-A does pretty solid biscuits 🙂
I need to make those delicious looking blueberry muffins, which are totally acceptable breakfast food by the way. I can’t even remember the last time I had McDonald’s. But I do remember the whole island of Kauai was ecstatic when they started serving breakfast all day. And then we got a 24 hour Jack-in-the-Box and they forgot all about McMuffins at 3:00pm. I’d rather make my own food.
Right? They are pretty darn epic!
Those are the biggest blueberries I’ve ever seen! They must grow some sort of wild blueberry strain on ‘roids down there in the Outback. Haha. I kid. I love blueberry muffins, and my mouth is watering just looking at these photos. Save me one? Also, don’t tell Niki…but sometimes I eat breakfast for dinner. (True story.)
Hahahahaha thank the frozen variety 😉
How dare you. Actually, I bow down to you!
These look delicious and healthy!! Can’t wait to try them out 🙂 I can’t seem to find the bake time for the gluten free option, though?
Hi Natalie! It’s 30-35 minutes, or until golden brown on top 🙂
Baha. I actually love Mcdonalds breakfast – its the only real time I go (I love their coffee but shh). SO if this is true that they are now serving it all day… Finally!!!
Cold pizza though. I will try my hardest to save pieces the night before just so I can have it cold for breakfast.
Their coffee is pretty solid!
I legit used to buy take out pizza the night before for BREAKFAST.
Haha calling 10:30 AM “early” is hilarious because I’ve usually been up for hours by then. My whole family is a bunch of night owls except for me, so when my mom says things like, “our flight leaves ridiculously early” she usually means 8:00.
I haven’t had McDonald’s breakfast in years, but the TJ frozen hash brown patties remind me of them and it makes me happy.
Right?!!!! She goes to sleep when I get up!