Carrot Cake Muffins

These healthy carrot muffins are your excuse to have carrot cake for breakfast! Made in just one bowl, they are made with almond flour and perfect for a paleo and gluten free diet! 

healthy carrot muffins

Healthy Carrot Cake Muffins

When it comes to healthy baked goods, I love a good blueberry cake, healthy chocolate cake, and these easy carrot muffins.

It’s no secret that I love starting my mornings on a sweet note. Whether it’s a bowl of piping hot oatmeal, some toast with strawberry jelly, or a filling smoothie, I don’t play favorites. As long as it’s sweet, I’m game. Recently, I’ve been leaning towards something of the baked variety, in particular, muffins. 

I’ve been meaning to share a carrot muffin recipe for quite some time. One of my friends is OBSESSED with carrot cake and wanted me to find a way for her to enjoy it for breakfast. With a slew of busy mornings coming up, I thought it was the perfect time to try out carrot cake muffins healthy enough for breakfast!

Now, these carrot cake muffins may look fancy, but I promise you, they are incredibly foolproof. No fancy ingredients or kitchen mixers needed.

No grains, no flour, and no refined sugar needed, but you’d never tell. The texture is moist, fluffy, and full of shredded carrots. The flavor is subtly sweet, without being overpowering. 

I gave a batch of these muffins to my carrot cake loving friend, and she could NOT believe me that they were healthy and low carb- My friend is not paleo or grain free, and was obsessed with them. 

Perfect for a healthy dessert or even a wholesome breakfast, you have no excuses not to make them.

How do you make healthy carrot muffins?

The Ingredients

  • Almond flour– You must use blanched almond flour or superfine almond flour, NOT almond meal. While all of them are essentially almonds, the almond meal still contains the skins of them. This yields a dense muffin, instead of a fluffy one. 
  • Baking soda– Gives the muffins some rise and fluffiness. 
  • Cinnamon and allspice– Essential spices for any good carrot muffin recipe. The extra cinnamon gives it that added oomph!
  • Coconut oil OR butter– Softened coconut oil or butter. I prefer using coconut oil, but either can be used.
  • Eggs– Room temperature eggs. 
  • Maple syrup– gives the muffins a subtle sweetness and adds moisture. You can also use honey or agave nectar. 
  • Shredded carrots– What is carrot cake without shredded carrots? You’ll use a full cup for these muffins.
  • Walnuts– Optional, but gives the muffins some added crunch and texture. 
  • Frosting– Optional, but I can never no to some healthy cream cheese frosting

The Instructions

In a large mixing bowl, add your dry ingredients and mix well. Next, add the rest of your ingredients, except for the carrots and walnuts. Once the batter is made, fold through your carrots and walnuts, if using them. Distribute the batter amongst a 12-count muffin tin, lined with muffin tins. Bake the muffins for 20 minutes, or until a skewer comes out clean. Remove from the oven and allow them to cool in the tins completely, before frosting. 

carrot cake muffins

Can I omit the eggs?

I tried this recipe using egg substitutes, like flax eggs and a formulated egg replacement. I was not pleased with the result, and I found the muffins to be unstable and with a gritty texture. 

If you’d like to make vegan carrot cake muffins, make a vegan carrot cake and bake that in a muffin tin instead of a loaf pan. 

Can I make these muffins keto? 

If you’d like these muffins to be keto friendly, simply swap out the maple syrup for sugar free maple syrup. 

Tips to make the best almond flour carrot muffins

  • Do not overbake the muffins, as they continue to cook while they are cooling down. 
  • If you’d like to make mini muffins, distribute the batter amongst 20 mini muffin liners in a muffin tin. Reduce the bake time to 14-16 minutes.
  • If you don’t follow a low carb diet, fold through raisins and other dried fruit to it. 
  • Pair some muffins with some protein for a well balanced breakfast.

How to store healthy carrot muffins

  • To store: Carrot muffins should always be stored in the refrigerator, to ensure they don’t spoil. Keep them covered and they will keep well for up to 1 week.
  • To freeze: Place muffins in a ziplock bag and store in the freezer for up to 6 months. 

almond flour carrot muffins

More healthy recipes to try

carrot breakfast muffins

Healthy Carrot Cake Muffins

These healthy carrot cake muffins are perfect for breakfast or a clean eating dessert! No grains or refined sugar needed but you'd never tell- Paleo, gluten free and easy to make!
4.99 from 52 votes
Print Rate
Course: Dessert
Cuisine: American
Prep Time: 5 minutes
Cook Time: 20 minutes
Total Time: 25 minutes
Servings: 12 muffins
Calories: 194kcal
Author: Arman



  • Preheat the oven to 180C/350F. Grease a 12-count muffin tin and fill with muffin tins and set aside.
  • In a large mixing bowl, mix together your dry ingredients and mix well. Next, add your wet ingredients, except for your carrots and walnuts, and mix until combined. Fold through your carrots and walnuts.
  • Distribute the batter amongst the 12 muffin tins. Bake for 20-22 minutes, or until a skewer comes out mostly clean.
  • Remove from the oven and allow to cool in the pan completely, before frosting.


* For keto muffins, replace the maple syrup with keto maple syrup. Honey and agave can also be used. 
** See the post for eggless options.
Recipe barely adapted from here.
TO STORE: Carrot muffins should always be stored in the refrigerator, to ensure they don't spoil. Keep them covered and they will keep well for up to 1 week.
TO FREEZE: Place muffins in a ziplock bag and store in the freezer for up to 6 months. 


Serving: 1muffin | Calories: 194kcal | Carbohydrates: 10g | Protein: 6g | Fat: 17g | Sodium: 127mg | Potassium: 77mg | Fiber: 3g | Vitamin A: 1849IU | Vitamin C: 1mg | Calcium: 63mg | Iron: 1mg | NET CARBS: 7g
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    Desserts Gluten Free Recipes Muffins and Cakes Paleo recipe



    34 thoughts on “Carrot Cake Muffins

    1. Hello, I want to start trying some of your recipes, but I had a question for the protein powder. The one you link to is always the vanilla flavor. Do you use that flavor in everything or do you use the chocolate flavor for say…your flourless brownie recipe (link on page is to the vanilla)? I’d like to try both this recipe and the flourless brownies so I’m not sure if I should buy 1 protein powder flavor or two. This is for the growing naturals rice protein powder that is vegan. Thank you.

    2. I made thesense muffins. They are dryer than I expected. In the list for the paleo version u don’t have milk in the ingrediet list. Should I have added the milk mentioned in the first version?
      I used 1/2 cup coconut flour
      1/2 cup almond flour and 1/2 cup of rice flour. I use these flours weekly for the muffins I regularly. And those muffins are moist unlike the ones I made today.

    3. 5 stars
      Carrot cake for breakfast? COUNT ME IN! This was super delicious and easy to make – and hey, another excuse to eat more carrot cake? yes please!

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