Healthy Pumpkin Cheesecake Muffins

5 from 6 votes

Delicious, impressive yet super simple to whip up- These Healthy Pumpkin Cheesecake Muffins are NOT just reserved for Fall! Gluten free, high in protein and very low in sugar, these are the perfect snack between meals or dessert- They also have a vegan option too!

Healthy Pumpkin Cheesecake Muffins- Delicious, impressive yet super simple to whip up- These Healthy Pumpkin Cheesecake Muffins are NOT just reserved for Fall! Gluten free, high in protein and very low in sugar, these are the perfect snack between meals or dessert! @thebigmansworld -


If there is one holiday or tradition that I kinda hate on Australia for not being on board with, it’s Thanksgiving

Healthy Pumpkin Cheesecake Muffins- Easy, delicious and LOADED with delicious spices- NO nasties and 100% delicious! {vegan, gluten free, sugar free recipe}-

I love the excitement leading up to it, the unity of friends and family and of course, the food. During my time in America, I experienced a few firsts- meeting amazing people, checking out a couple of new places and….eating the best sandwich ever

This sandwich must have been from some famous deli or cafe in NYC where people line up for days to obtain!’

That were the words from a good mate of mine after I explained this story to him. I may or may not lose many readers when I say where said sandwich was eaten. 


I know, I know. ‘The best sandwich’ from Starbucks but hear me out. It’s not one of their standard offerings- it was their Holiday sandwich- a Turkey and Stuffing Panini. Wow. I would never have in a million years thought I would eat the world’s greatest sandwich from Starbucks, but it happened! 

Healthy Pumpkin Cheesecake Muffins- Easy, delicious and LOADED with delicious spices- NO nasties and 100% delicious! {vegan, gluten free, sugar free recipe}-

Now that I’m back on home soil, I am getting slightly very jealous seeing everyone getting pumped up for Thanksgiving and ready to suffer food comas. Turkey, pecan pie and honey roasted vegetables- damn, my mouth is already watering.

One thing I will NOT be FOMO over (is that acronym used correctly?) is pumpkin pie. I’m sorry. I just cannot get on board with it. I tried it in 2012 AND in 2013 and still wasn’t on board. One which I actually enjoyed was the bite I ate at Davida’s joint  which was Paleo with a homemade crust. However, when she suggested having it for breakfast I drew the line. Pumpkin in Australia is available year round and is mostly eaten savoury- My favourite way is simply roasted in olive oil and sea salt until tender. BOOM. Delicious. However, I love using it in baked goods and other sweet treats- except for pie. 

Back to FOMO on Thanksgiving. In honour of this holiday which I am missing out on, I will cry into my pillow while stuffing my face with perhaps, the greatest recipe to hit this blog to date. Big call.

Healthy Pumpkin Cheesecake Muffins- Easy, delicious and LOADED with delicious spices- NO nasties and 100% delicious! {vegan, gluten free, sugar free recipe}-

This recipe took FOREVER to perfect. FOREVER. 

I used adapted Averie’s Peanut Butter and Jelly muffins but gave it a Pumpkin Cheesecake makeover. Why did this recipe take over? Well.

Attempt 1- The muffins overflowed and looked like mini cauliflowers

Attempt 2- The muffins gave birth cream cheese. (They blew up. Serves me right for over stuffing).

Attempt 3- The cream cheese centre sunk to the bottom. (…which was a blessing in disguise. I dunked crackers in the mess it left).

Attempt 4- Don’t ask. 


Safe to say, attempt 5 was a success (excluding the 3 out of the 15 which once again, blew up). These (healthy!) gluten free muffins would make the perfect dessert or treat for your Thanksgiving dinner- but also a snack anytime of the day! It’s relatively high in protein, low in sugar compared to many of it’s relatable counterparts and the bonus- a serving of veggies too! The cream cheese centre is like a welcoming surprise! I used Davida’s pumpkin pie spice but in all honestly, I have no idea what pumpkin pie spice is supposed to taste like, but it gave the cream cheese a really amazing smell.

Friends, when you sit down to thanksgiving dinner this year- think of your Aussie mate here.

With these muffins. Don’t be jealous.

Healthy Pumpkin Cheesecake Muffins- Easy, delicious and LOADED with delicious spices- NO nasties and 100% delicious! {vegan, gluten free, sugar free recipe}-

Healthy Pumpkin Cheesecake Muffins

A delicious gluten freemuffin recipe with a cheesecake centre and perfect for the festive season- or a snack anytime!
5 from 6 votes
Print Rate
Servings: 13
Author: Arman


Dry Ingredients

  • 1 ½ cups gluten free flour blend can sub for oat flour*
  • ½ cup coconut sugar
  • 1 teaspoon baking soda
  • 1 teaspoon baking powder

Wet ingredients

  • 1 large egg*
  • ½ cup Greek yogurt I used Chobani 0%*
  • ½ milk of choice I used Unsweetened Almond milk
  • ½ cup mild tasting nut butter of choice I used almond butter
  • ½ cup canned pumpkin not pumpkin pie filling

Cream cheese filling

  • 3 tablespoon cream cheese softened*
  • 1 teaspoon pumpkin pie spice
  • 1 teaspoon coconut sugar can sub for brown


  • Preheat the oven to 180 degrees Celsius. Generously coat 2 standard sizes muffin trays with oil or butter (this recipe makes 15 muffins- if you want giant ones which overflow, you can use a standard 12 count tray).
  • In a large mixing bowl, combine the flour, coconut sugar and baking powder. In a small mixing bowl, whisk the egg, Greek yogurt, milk, nut butter and canned pumpkin until fully incorporated.
  • In a separate small mixing bowl, combine the softed cream cheese, pumpkin pie spice and coconut sugar and mix until combined. It should look similar to butter. Set aside.
  • Add the wet mixture to dry mixture and mix well until no clumps remain. Do not overmix.
  • Pour 3 tablespoons of batter into the muffin tray. Add 1 teaspoon of the cream cheese filling as close to the centre of each muffin as possible. Top each remaining muffin with around 2 tablespoons of the remaining batter until it is fully used up.
  • Bake in the oven for 18-25 minutes (depending on oven type) until the tops are golden. Do not over bake.
  • Remove from the oven and allow to sit in the tray for 5 minutes, before removing to a wire rack. Allow to cool completely.


* This has been successfully tested using a flax egg, dairy free/vegan yogurt and vegan cream cheese.
I stored these at room temperature (covered) for 3 days- any longer and they dry out. They freeze really well- simply thaw completely.
If you use oat flour, they will have more of a sunken look.
Adapted from Averie from Averie Cooks
Tried this recipe?Give us a shout at @thebigmansworld or tag #thebigmansworld!


What are you looking forward to eating this Thanksgiving (if you celebrate it)? 

Are you a fan of pumpkin pie?

Is it criminal that this sandwich came from Starbucks? (Please don’t say yes)


131 thoughts on “Healthy Pumpkin Cheesecake Muffins

  1. I think you should go for it and invite a table full of friends and have an Aussie Thanksgiving of your own. I literally lol’ed about the failed attempts. I have been there, and it is great to commiserate with you.

    1. I actually suggested that, Katie! Then my friend said he’d come over with deli turkey sandwiches from Subway…Happy Thanksgiving indeed.

  2. I love pumpkin stuff including pumpkin pie! Pumpkin bread with cream cheese is a fave so these are totally calling me. Have you been to the States for Thanksgiving? I can totally see you losing your mind.

    1. YES! I was there in 2012 for it when I studied in Oswego and was shocked when my sweet potatoes came with marshmallows and brown sugar on it!

  3. Haha, I see that sandwich in the cold display case everyday while I’m waiting in line for my coffee…I’ve never seen anyone get it though…or any sandwich for that matter, haha!
    P.S. I’ve always wanted to try and bake a “stuffed” muffin or cupcake! Ah! Need to get on that!

  4. I am not the biggest fan of cheesecakes, so I thank you for this twinkie-like version (and I say that completely honestly). I think that the starbucks panini sounds delicious, and that is saying something, considering that I’ve been sick all this week and 95% of foods have been about as appetizing as a lobotomy, which coming from me is saying something. But it has all my favorite things, so I intend to get one for myself (hopefully) soon!

  5. I have so many comments here. First, sandwich from Starbucks? Really? But it sounds like it was really good…I’m just surprised at that one. As far as pumpkin pie, I think you should make a savory version. I mean quiche is eaten in a pie crust, and it’s savory. Do it. And top it with crumbled bacon…because bacon makes everything better! But now to these muffins. I need these in my life. I apparently haven’t fully lived yet because I’ve never had one of these. They sound incredible. Mail me one?

    1. I know, I know. I hang my head in shame.

      Just kidding, it was delicious (I had nothing to compare it to!). YES- mate, I have a pumpkin quiche recipe but it falls apart. I will redo. And I will personally deliver them, save me a seat at Thanksgiving dinner.

    1. Thanks, Dannii! I’m trying hard to make a healthy cheesecake but…it just keeps failing!

  6. I don’t even think you have to ask me that question, do you? lol! Aside from pumpkin pie, I love stuffing. Oh, and Pillsbury crescent rolls…oh who am I kidding…I love it all on that day, which is why I’m running a 5k that morning. lol!

    1. Ohh stuffing….who needs turkey?

      Hope you enjoy that pie- have an extra slice for me! (Please do.).

  7. I’m not gonna lie, pumpkin pie is one of my all time favorite desserts, especially when it’s infused with a ton of spices. I’ve made a similar muffin before, and it definitely took me a few tries to get it right! It’s that stubborn cream cheese filling!

  8. You should definitely celebrate yourself over in Australia. Start a new trend or something 🙂 And a sandwich from Starbucks? I am always afraid to try their food items except for the breads….I guess need to get on board

    1. I will! Last year I ate deli turkey and chocolate covered pretzels lol! DON’T try the bread from an airport- their panini was so dry!

  9. I love pumpkin pie! Once fall comes around here I’m straight into pumpkin craze. These muffins look gorgeous, I’m glad they’re no longer spouting cream cheese haha. Also, don’t know if you saw, but I tagged you in a question and answer on my blog today! Check it out if you have time 🙂

    1. Haha, Gen it was the worst- but on the good side, I ate alot of cream cheese.

      I did see- thanks for that- I loved reading how you’ve lived in such unique locations although…why not Australia 😉

  10. We don’t celebrate Thanksgiving here in Germany. Well, why should we anyway, it’s not our history/tradition. I’d love to join the festivities once though. It sounds like THE holiday! All that food…mmmmh. But our Christmas is awesome as well (think roast goose!!)
    I liked the pumpkin pie that I tried in Las Vegas, it was good. Don’t know why everyone makes such a fuss about it though.
    I really love that cream cheese center of these muffins!

    1. Ohhh that sounds delicious- although I think it may melt and seep through! Maybe coconut cream?

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